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Understanding the foundations of quantum mechanics, and
in particular the measurement problem. This may result
in a radical modification of our conception of physical
reality.
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The development of a quantum mechanically consistent
theory of gravity. The reconciliation of general
relativity with quantum theory is absolutely essential
for challenge (3) below.
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The unification of all the fundamental forces in nature.
Supersymmetric string theories offer a promising
prospect in this regard.
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Related to the above is a determination of the nature of
dark matter on the scale of clusters and superclusters
of galaxies.
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On a different front, an understanding of the origin of
life, and a firm determination of the existence or
non-existence of extraterrestrial intelligent life.
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Again on a different front, an understanding of the
operation of the human brain at the fundamental level.